6 Best E-Invoice Software in Malaysia for 2026

Picking e-invoice software isn’t just about getting your invoices out the door. You also need to consider how it works with MyInvois, whether it handles supplier invoices, and whether it supports self-billed e-invoices for purchases from overseas suppliers.

We’ve compared six options AutoCount, SQL Accounting, Xero, Bukku, QuickBooks, and Zoho Books to help you see what each one offers, how much it costs, and whether it suits your business. We’ll also look at how e-invoicing, accounting, and paying overseas suppliers work together for a Malaysian importer.

Key Takeaways

• E-invoice software in Malaysia helps businesses submit invoices through MyInvois, track validation statuses, organise records, and reduce manual data entry.
• Compare six e-invoice software options in Malaysia: AutoCount, SQL Accounting, Xero, Bukku, QuickBooks, and Zoho Books, based on features, pricing, and MyInvois compatibility.
• Check whether the software supports receiving supplier e-invoices, tracking validation statuses, and connecting invoice data with accounting records.
• The free MyInvois Portal may suit businesses with simpler needs, while API-integrated software can connect invoicing with existing accounting workflows.
• Malaysian businesses paying overseas suppliers can use WorldFirst alongside their e-invoice software to manage international payments and eligible multi-currency balances.

What Is E-Invoice Software in Malaysia?

E-invoice software helps Malaysian businesses create, submit, and manage electronic invoices through LHDN’s MyInvois system. Depending on the provider, it may also support supplier invoice retrieval, validation, and accounting integration.

Benefits of using e-invoice software include:

• Less manual data entry by automating parts of the invoicing process.
• Easier invoice tracking through submission and validation statuses.
• Organised records by keeping invoice data accessible for accounting.
• Simpler reconciliation by connecting invoice information with accounting records.
• Supplier invoice management through supported receiving and retrieval features.

Businesses buying from overseas suppliers should also check whether the software supports self-billed e-invoices for eligible purchases.

How E-Invoice Software Works with MyInvois

E-invoice software with MyInvois API integration allows businesses to send invoice data directly from their accounting or invoicing system to LHDN for validation.

Here’s how the process generally works:

1. Create the invoice. Enter the transaction details, including the buyer’s information, items sold, and applicable taxes.
2. Submit it to MyInvois. The software sends the invoice data through the MyInvois API.
3. Receive the validation result. MyInvois checks the submitted document and returns its validation status.
4. Retrieve and manage the invoice. Depending on the software’s capabilities, businesses can retrieve validated documents and update their accounting records.

LHDN’s Submit Documents API accepts up to 100 documents per submission, subject to a combined payload limit of 5 MB and a maximum of 300 KB per document. Businesses processing large invoice volumes should check how their software manages these limits.

MyInvois Portal vs Software with API Integration

Malaysian businesses can use the free MyInvois Portal provided by LHDN or choose third-party software that connects to MyInvois through an API. The main difference is how much of the invoicing process you handle manually.

Which should you choose?

The MyInvois Portal may be sufficient if your business handles a small number of invoices. API-integrated software may suit businesses processing invoices regularly or wanting to connect invoicing with accounting. Before choosing, confirm support for incoming supplier invoices and self-billed e-invoices for eligible purchases from foreign suppliers.

What to Look for in E-Invoice Receiving Software

E-invoice receiving software helps businesses retrieve and manage incoming supplier invoices, check their validation status, and connect invoice details with accounting records. For Malaysian businesses, the key is to confirm which features the software actually supports.

• Invoice retrieval: Check whether the software can retrieve incoming e-invoices from MyInvois and how it handles older documents.
• Validation status: Look for access to invoice validation results and document details.
• Document storage: Check how invoices are stored and retrieved for accounting and record-keeping. LHDN’s recent-documents API covers documents from the last 31 days, so confirm how the software supports access to older records.
• Accounting integration: Check whether invoice data can be transferred to your accounting system or requires manual entry.
• Self-billed e-invoices: If you buy from foreign suppliers, verify whether the software supports creating and submitting self-billed e-invoices for eligible transactions.

The 31-day limit applies to the Get Recent Documents API, not all MyInvois document retrieval. Software should also be checked for its ability to retain local copies of invoices for future reference.

6 Best E-Invoice Software in Malaysia Compared

Here’s how six e-invoice software options in Malaysia compare in terms of features, pricing, integrations, and support for self-billed e-invoices from foreign suppliers.

Disclaimer: Pricing is correct as of 19 October 2026, and may change and vary by plan, taxes, and promotional offers. Check each provider’s official website for the latest rates and terms.

AutoCount

AutoCount combines accounting and e-invoicing with MyInvois integration. It supports invoice submission, approval workflows, and self-billed e-invoices for eligible purchases from foreign suppliers. AutoCount Accounting V2 also supports importing validated supplier e-invoices and reconciling them against records retrieved from LHDN.

Best for: Malaysian businesses looking for e-invoice software that brings accounting, supplier invoice management, and e-invoicing into one workflow.

SQL Accounting

SQL Accounting integrates with LHDN’s MyInvois system, allowing businesses to submit sales invoices, credit notes, and debit notes directly from the software. It also supports importing supplier e-invoices and managing them within the accounting workflow.

For eligible purchases from foreign suppliers, businesses can create and submit self-billed e-invoices through purchase invoices, cash purchases, or payment vouchers.

Best for: Malaysian SMEs that want MyInvois integration, supplier invoice handling, and accounting in one system.

Xero

Xero offers Malaysian businesses e-invoicing through Invoici by Xero, which connects Xero to LHDN’s MyInvois system. Businesses can submit invoices, track validation statuses, and manage consolidated e-invoices alongside their accounting records. Xero also supports receiving e-invoices through Peppol, but you should confirm direct retrieval of incoming documents from MyInvois.

Invoici also supports self-billing, allowing businesses to submit self-billed e-invoices through MyInvois when the transaction meets LHDN’s requirements.

Best for: Malaysian businesses that want cloud accounting with MyInvois e-invoicing and self-billing capabilities.

Bukku

Bukku is cloud-based accounting software for Malaysian SMEs and an option for businesses comparing e-invoice software. It supports MyInvois submission, individual and consolidated e-invoices, validation status tracking, and self-billed e-invoices through purchase bills. Businesses can also manage sales, expenses, and accounting records within the platform.

For eligible purchases from foreign suppliers, businesses can create a purchase bill and submit it to MyInvois as a self-billed e-invoice.

Best for: Malaysian SMEs looking for cloud accounting with built-in e-invoicing and self-billing workflows.

QuickBooks

QuickBooks Online supports Malaysian e-invoicing through its integration with Sovos, connecting the accounting software to LHDN’s MyInvois system. Businesses can submit individual and consolidated e-invoices and track their validation status.

QuickBooks also supports a self-billed e-invoicing workflow for eligible transactions. Businesses purchasing from foreign suppliers should confirm the applicable LHDN requirements before using this feature.

Best for: Malaysian SMEs looking for accounting software with integrated e-invoicing and a documented self-billing workflow.

Zoho Books

Zoho Books is an accounting platform that supports Malaysian e-invoicing through the third-party eInvoice Malaysia for Zoho Books extension, developed by Ooroboros Sdn Bhd. It connects Zoho Books with LHDN’s MyInvois system for invoice submission, cancellation, QR code generation, and validation tracking. The extension is paid separately from the Zoho Books subscription.

Zoho Books’ API documentation also describes creating and submitting self-billed e-invoices. Businesses buying from foreign suppliers should confirm that their Malaysian setup supports the relevant workflow and that the transaction meets LHDN’s eligibility rules.

Best for: Malaysian SMEs looking for e-invoice software that integrates with their existing Zoho Books accounting workflow.

How to Choose the Right E-Invoice Software for Malaysian Businesses

Before choosing e-invoice software, consider how well it fits your business’s invoicing and accounting needs.

• MyInvois compatibility: Check whether the software connects directly to MyInvois and supports the invoice types your business needs, including self-billed e-invoices for eligible purchases from foreign suppliers.
• Pricing: Compare subscription fees, setup costs, integration charges, and paid add-ons. Check which features each plan includes.
• Incoming supplier invoices: Find out whether the software can retrieve supplier e-invoices, display validation statuses, and store documents for future reference.
• Accounting integration: Check whether the software connects invoice data to your existing accounting system or requires manual entry.
• Business growth: Consider whether the software can handle higher invoice volumes, multiple users, and more complex workflows as your business grows.

The best e-invoice software Malaysian businesses choose should support both their current invoicing needs and the way they manage supplier payments and accounting records.

How WorldFirst Supports Malaysian Businesses Paying Overseas Suppliers

For Malaysian businesses importing goods or working with overseas suppliers, paying invoices across borders can involve multiple currencies and transactions to track. WorldFirst works alongside e-invoice and accounting software to help manage supplier payments and international funds.

• Pay overseas suppliers: Send payments in supported currencies and destinations, with transaction tracking to monitor payment progress. Read more about how to send international payments.
• Manage multiple currencies: Hold funds in different currencies through a World Account. When supported, paying from a matching currency balance can help avoid an extra conversion.
• Pay on 1688.com: Use World Pay to pay eligible suppliers when purchasing through 1688.com.
• Pay other Chinese suppliers: Explore WorldFirst’s China payment solution for eligible payments to suppliers in China.
• Use international sales proceeds: Collect funds from 100+ marketplaces and 30+ payment gateways through WorldFirst, then use eligible foreign-currency balances to pay suppliers where supported.
• Manage currency exchange: Use Spot Contracts for immediate exchange needs or Firm Orders to exchange currencies when your target rate is reached.

Open a WorldFirst World Account to manage multiple currencies and pay overseas suppliers with greater convenience.

FAQs

1. What is the best e-invoice software in Malaysia?

The best option depends on your business needs, budget, and accounting workflow. AutoCount, SQL Accounting, Xero, Bukku, QuickBooks, and Zoho Books offer different e-invoicing and accounting features. Compare their MyInvois integration, supplier invoice handling, pricing, and support for self-billed e-invoices before deciding.

2. Is there free e-invoice software in Malaysia?

Yes. Malaysian businesses can use the free MyInvois Portal provided by LHDN to manage e-invoices. Third-party software may charge subscription, integration, or add-on fees, so check each provider’s pricing and included features before choosing a plan.

3. What is e-invoice receiving software?

E-invoice receiving software helps businesses retrieve and manage incoming supplier e-invoices. Depending on the provider, it may support validation status tracking, document storage, and accounting integration. Check whether it retrieves documents from MyInvois or only manages invoices received through other channels.

4. Do I need to issue self-billed e-invoices for foreign suppliers?

Malaysian businesses may need to issue self-billed e-invoices for eligible transactions with foreign suppliers under LHDN’s rules. Check the current guidelines to confirm when self-billing applies and whether your chosen software supports creating and submitting these invoices through MyInvois.

5. Can I use accounting software and WorldFirst together?

Yes. Accounting and e-invoice software can help manage invoices and financial records, while WorldFirst supports eligible international supplier payments and multi-currency account management. They serve different purposes and can complement each other when managing purchases from overseas suppliers.

Sources:

1. https://sdk.myinvois.hasil.gov.my/einvoicingapi/
2. https://sdk.myinvois.hasil.gov.my/einvoicingapi/02-submit-documents//
3. https://www.autocountsoft.com/autocount-einvoice-solution-malaysia_Why_AC.html
4. https://www.autocountsoft.com/pro-cloud-acc.html
5. https://docs.sql.com.my/sqlacc/usage/myinvois/e-invoice-operation
6. https://www.sql.com.my/pricing/
7. https://www.xero.com/my/accounting-software/e-invoicing/
8. https://central.xero.com/0/article/e-Invoicing-with-Invoici-explained
9. https://bukku.my/malaysia-e-invoice-compliance-lhdn-myinvois-peppol-network
10. https://intercom.help/bukku/en/articles/13276337-e-invoicing-submission-methods-and-myinvois-control-in-bukku
11. https://bukku.my/pricing
12. https://quickbooks.intuit.com/my/e-invoicing/
13. https://ooroboros.com/zoho/books
14. https://marketplace.zoho.com/app/books/einvoice-malaysia-for-zoho-books
15. https://www.worldfirst.com/my/product/pay/
16. https://www.worldfirst.com/my/product/pay/pay-business-partners/